Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ushbp1Q8R370 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
Ushbp1Q8R370 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ushbp1Q8R370 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ushbp1Q8R370 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ushbp1Q8R370 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ushbp1Q8R370 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Gm5264-201ENSMUST00000190584 848 ntBASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ushbp1Q8R370 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Gm11779-201ENSMUST00000118541 368 ntBASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ushbp1Q8R370 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Mir5126-201ENSMUST00000175513 77 ntBASIC17.43■□□□□ 0.38
Ushbp1Q8R370 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ushbp1Q8R370 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms