Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Gm27646-201ENSMUST00000183989 110 ntBASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Gm6376-201ENSMUST00000209407 580 ntBASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Brf1Q8CFK2 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Gm5864-201ENSMUST00000202263 970 ntBASIC18.81■□□□□ 0.6
Brf1Q8CFK2 AC093926.2-201ENSMUST00000214468 1228 ntBASIC18.81■□□□□ 0.6
Brf1Q8CFK2 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Rps4l-201ENSMUST00000071745 943 ntBASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Brf1Q8CFK2 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Gm18856-201ENSMUST00000178096 1374 ntBASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Brf1Q8CFK2 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Gm25990-201ENSMUST00000102440 86 ntBASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 AC159106.1-201ENSMUST00000224421 690 ntBASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms