Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Gm13830-205ENSMUST00000201195 1155 ntBASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nup88Q8CEC0 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Nup88Q8CEC0 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Nup88Q8CEC0 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Nup88Q8CEC0 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
Nup88Q8CEC0 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 AC160338.1-201ENSMUST00000214232 705 ntBASIC18.39■□□□□ 0.53
Nup88Q8CEC0 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Gm6296-201ENSMUST00000222599 943 ntBASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 AC154412.1-201ENSMUST00000226540 2786 ntBASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nup88Q8CEC0 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Nup88Q8CEC0 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Gm7862-201ENSMUST00000121461 292 ntBASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Gm1818-201ENSMUST00000169406 1184 ntBASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Gm27867-201ENSMUST00000184778 125 ntBASIC18.37■□□□□ 0.53
Nup88Q8CEC0 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nup88Q8CEC0 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nup88Q8CEC0 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC18.36■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms