Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Usp40Q8BWR4 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC21.32■■□□□ 1
Usp40Q8BWR4 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC21.32■■□□□ 1
Usp40Q8BWR4 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC21.32■■□□□ 1
Usp40Q8BWR4 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Gm13332-201ENSMUST00000120451 1398 ntBASIC21.32■■□□□ 1
Usp40Q8BWR4 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
Usp40Q8BWR4 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC21.31■■□□□ 1
Usp40Q8BWR4 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC21.31■■□□□ 1
Usp40Q8BWR4 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC21.31■■□□□ 1
Usp40Q8BWR4 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC21.31■■□□□ 1
Usp40Q8BWR4 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC21.31■■□□□ 1
Usp40Q8BWR4 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC21.31■■□□□ 1
Usp40Q8BWR4 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC21.31■■□□□ 1
Usp40Q8BWR4 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC21.31■■□□□ 1
Usp40Q8BWR4 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp40Q8BWR4 AC025913.2-201ENSMUST00000220136 1766 ntBASIC21.31■■□□□ 1
Usp40Q8BWR4 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
Usp40Q8BWR4 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC21.3■■□□□ 1
Usp40Q8BWR4 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Nrn1-204ENSMUST00000224323 1779 ntBASIC21.3■■□□□ 1
Usp40Q8BWR4 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
Usp40Q8BWR4 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Usp40Q8BWR4 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp40Q8BWR4 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC21.29■■□□□ 1
Usp40Q8BWR4 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
Usp40Q8BWR4 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usp40Q8BWR4 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usp40Q8BWR4 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Usp40Q8BWR4 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Usp40Q8BWR4 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Usp40Q8BWR4 Gm11025-201ENSMUST00000140773 466 ntBASIC21.29■■□□□ 1
Usp40Q8BWR4 Rpph1-201ENSMUST00000175096 319 ntBASIC21.29■■□□□ 1
Usp40Q8BWR4 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
Usp40Q8BWR4 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC21.29■■□□□ 1
Usp40Q8BWR4 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Usp40Q8BWR4 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Usp40Q8BWR4 AC153526.5-201ENSMUST00000218661 2147 ntBASIC21.29■■□□□ 1
Usp40Q8BWR4 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Usp40Q8BWR4 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp40Q8BWR4 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
Usp40Q8BWR4 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp40Q8BWR4 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC21.28■■□□□ 1
Usp40Q8BWR4 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC21.28■■□□□ 1
Usp40Q8BWR4 Gm11745-201ENSMUST00000121669 448 ntBASIC21.28■■□□□ 1
Usp40Q8BWR4 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC21.28■■□□□ 1
Usp40Q8BWR4 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC21.28■■□□□ 1
Usp40Q8BWR4 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp40Q8BWR4 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
Usp40Q8BWR4 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms