Protein–RNA interactions for Protein: Q6PAV2

Herc4, Probable E3 ubiquitin-protein ligase HERC4, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Herc4Q6PAV2 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Herc4Q6PAV2 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Gm8097-201ENSMUST00000117903 829 ntBASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Gm43347-201ENSMUST00000200226 580 ntBASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Herc4Q6PAV2 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Grk6-207ENSMUST00000225925 2769 ntBASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Herc4Q6PAV2 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Gm24589-201ENSMUST00000116692 94 ntBASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Gm27459-201ENSMUST00000184860 107 ntBASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Gm19164-201ENSMUST00000210667 640 ntBASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Herc4Q6PAV2 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC17.21■□□□□ 0.34
Herc4Q6PAV2 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Herc4Q6PAV2 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Herc4Q6PAV2 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Herc4Q6PAV2 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Herc4Q6PAV2 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms