Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim28Q62318 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.16■□□□□ 0.82
Trim28Q62318 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim28Q62318 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC20.15■□□□□ 0.82
Trim28Q62318 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Trim28Q62318 Gm25925-201ENSMUST00000158314 306 ntBASIC20.15■□□□□ 0.82
Trim28Q62318 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC20.15■□□□□ 0.82
Trim28Q62318 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC20.15■□□□□ 0.82
Trim28Q62318 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Trim28Q62318 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC20.15■□□□□ 0.82
Trim28Q62318 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC20.15■□□□□ 0.82
Trim28Q62318 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim28Q62318 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim28Q62318 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim28Q62318 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
Trim28Q62318 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim28Q62318 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trim28Q62318 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Trim28Q62318 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC20.14■□□□□ 0.82
Trim28Q62318 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim28Q62318 AC069562.2-201ENSMUST00000224644 2146 ntBASIC20.14■□□□□ 0.81
Trim28Q62318 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim28Q62318 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Trim28Q62318 Gm13332-201ENSMUST00000120451 1398 ntBASIC20.14■□□□□ 0.81
Trim28Q62318 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim28Q62318 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim28Q62318 Gm13365-201ENSMUST00000121188 973 ntBASIC20.14■□□□□ 0.81
Trim28Q62318 Mir1895-201ENSMUST00000122615 79 ntBASIC20.14■□□□□ 0.81
Trim28Q62318 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC20.14■□□□□ 0.81
Trim28Q62318 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC20.14■□□□□ 0.81
Trim28Q62318 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim28Q62318 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Trim28Q62318 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim28Q62318 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC20.14■□□□□ 0.81
Trim28Q62318 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Trim28Q62318 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim28Q62318 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Trim28Q62318 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC20.13■□□□□ 0.81
Trim28Q62318 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC20.13■□□□□ 0.81
Trim28Q62318 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Trim28Q62318 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Trim28Q62318 Nrn1-204ENSMUST00000224323 1779 ntBASIC20.13■□□□□ 0.81
Trim28Q62318 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim28Q62318 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim28Q62318 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim28Q62318 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trim28Q62318 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trim28Q62318 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Trim28Q62318 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
Trim28Q62318 Gm11025-201ENSMUST00000140773 466 ntBASIC20.12■□□□□ 0.81
Trim28Q62318 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC20.12■□□□□ 0.81
Trim28Q62318 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Trim28Q62318 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim28Q62318 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim28Q62318 Gm8396-201ENSMUST00000057361 823 ntBASIC20.12■□□□□ 0.81
Trim28Q62318 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trim28Q62318 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trim28Q62318 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim28Q62318 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
Trim28Q62318 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim28Q62318 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
Trim28Q62318 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim28Q62318 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim28Q62318 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC20.11■□□□□ 0.81
Trim28Q62318 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC20.11■□□□□ 0.81
Trim28Q62318 Gm5628-201ENSMUST00000222318 1049 ntBASIC20.11■□□□□ 0.81
Trim28Q62318 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC20.11■□□□□ 0.81
Trim28Q62318 CT025555.1-201ENSMUST00000225901 1217 ntBASIC20.11■□□□□ 0.81
Trim28Q62318 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
Trim28Q62318 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim28Q62318 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim28Q62318 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Trim28Q62318 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC20.11■□□□□ 0.81
Trim28Q62318 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trim28Q62318 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC20.11■□□□□ 0.81
Trim28Q62318 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim28Q62318 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Trim28Q62318 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim28Q62318 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trim28Q62318 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC20.11■□□□□ 0.81
Trim28Q62318 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Trim28Q62318 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Trim28Q62318 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim28Q62318 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim28Q62318 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Trim28Q62318 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Trim28Q62318 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim28Q62318 Gm11745-201ENSMUST00000121669 448 ntBASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms