Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
ShhQ62226 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
ShhQ62226 Gm4995-201ENSMUST00000117247 432 ntBASIC14.54□□□□□ -0.08
ShhQ62226 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.54□□□□□ -0.08
ShhQ62226 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
ShhQ62226 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
ShhQ62226 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.54□□□□□ -0.08
ShhQ62226 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14.54□□□□□ -0.08
ShhQ62226 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC14.54□□□□□ -0.08
ShhQ62226 AC069562.2-201ENSMUST00000224644 2146 ntBASIC14.54□□□□□ -0.08
ShhQ62226 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
ShhQ62226 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
ShhQ62226 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.53□□□□□ -0.08
ShhQ62226 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Gm8784-201ENSMUST00000222096 1435 ntBASIC14.53□□□□□ -0.08
ShhQ62226 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
ShhQ62226 Gm25990-201ENSMUST00000102440 86 ntBASIC14.53□□□□□ -0.08
ShhQ62226 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC14.53□□□□□ -0.08
ShhQ62226 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC14.53□□□□□ -0.08
ShhQ62226 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
ShhQ62226 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Gm44430-201ENSMUST00000203376 995 ntBASIC14.53□□□□□ -0.08
ShhQ62226 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
ShhQ62226 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
ShhQ62226 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 AC093043.3-201ENSMUST00000226531 2273 ntBASIC14.53□□□□□ -0.08
ShhQ62226 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ShhQ62226 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ShhQ62226 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ShhQ62226 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ShhQ62226 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
ShhQ62226 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
ShhQ62226 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
ShhQ62226 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC14.52□□□□□ -0.08
ShhQ62226 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ShhQ62226 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
ShhQ62226 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
ShhQ62226 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.52□□□□□ -0.09
ShhQ62226 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
ShhQ62226 Gm4535-201ENSMUST00000182274 558 ntBASIC14.52□□□□□ -0.09
ShhQ62226 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.52□□□□□ -0.09
ShhQ62226 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 Gm10355-201ENSMUST00000097146 517 ntBASIC14.52□□□□□ -0.09
ShhQ62226 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
ShhQ62226 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
ShhQ62226 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC14.52□□□□□ -0.09
ShhQ62226 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
ShhQ62226 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ShhQ62226 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms