Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Gm11355-201ENSMUST00000121120 306 ntBASIC14.86□□□□□ -0.03
Nr1h4Q60641 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 AL672049.1-201ENSMUST00000197943 91 ntBASIC14.86□□□□□ -0.03
Nr1h4Q60641 Gm21559-201ENSMUST00000220638 855 ntBASIC14.86□□□□□ -0.03
Nr1h4Q60641 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.86□□□□□ -0.03
Nr1h4Q60641 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Gm8587-201ENSMUST00000076538 843 ntBASIC14.86□□□□□ -0.03
Nr1h4Q60641 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nr1h4Q60641 Sybu-209ENSMUST00000228639 4113 ntBASIC14.85□□□□□ -0.03
Nr1h4Q60641 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Tfap2a-203ENSMUST00000223869 2037 ntBASIC14.85□□□□□ -0.03
Nr1h4Q60641 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Gm7889-201ENSMUST00000185591 958 ntBASIC14.85□□□□□ -0.03
Nr1h4Q60641 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.85□□□□□ -0.03
Nr1h4Q60641 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Nr1h4Q60641 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Nr1h4Q60641 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Nr1h4Q60641 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nr1h4Q60641 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nr1h4Q60641 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms