Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps54Q5SPW0 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Vps54Q5SPW0 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps54Q5SPW0 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps54Q5SPW0 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.7■□□□□ 0.58
Vps54Q5SPW0 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Gm6443-201ENSMUST00000203599 874 ntBASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Gm5364-201ENSMUST00000216789 889 ntBASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.69■□□□□ 0.58
Vps54Q5SPW0 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vps54Q5SPW0 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Gm11764-201ENSMUST00000120221 623 ntBASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Gm4899-201ENSMUST00000178708 719 ntBASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Vps54Q5SPW0 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Gm5253-201ENSMUST00000187104 1025 ntBASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps54Q5SPW0 AC133083.1-201ENSMUST00000221736 2209 ntBASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 AC122901.1-201ENSMUST00000214203 1790 ntBASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Gm9682-201ENSMUST00000197505 556 ntBASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps54Q5SPW0 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Vps54Q5SPW0 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms