Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Gm19164-201ENSMUST00000210667 640 ntBASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC16.69■□□□□ 0.26
Upf3bQ3ULL6 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Gm11780-201ENSMUST00000136880 516 ntBASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Mir8098-201ENSMUST00000184011 137 ntBASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Gm5864-201ENSMUST00000202263 970 ntBASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3bQ3ULL6 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gm18856-201ENSMUST00000178096 1374 ntBASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gm13418-201ENSMUST00000119097 944 ntBASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gm11452-201ENSMUST00000122376 690 ntBASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gm28659-201ENSMUST00000188013 759 ntBASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 Gm7669-201ENSMUST00000210184 1603 ntBASIC16.67■□□□□ 0.26
Upf3bQ3ULL6 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Gm27741-201ENSMUST00000185060 237 ntBASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms