Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Rpph1-201ENSMUST00000175096 319 ntBASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Gm8318-201ENSMUST00000182954 872 ntBASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Mir6990-201ENSMUST00000183724 91 ntBASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3aQ3ULJ3 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3aQ3ULJ3 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Rprl2-201ENSMUST00000157150 290 ntBASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 AA543401-201ENSMUST00000164248 1269 ntBASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Gm18889-201ENSMUST00000174284 929 ntBASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Gm43474-201ENSMUST00000196415 774 ntBASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC16.34■□□□□ 0.21
Upf3aQ3ULJ3 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Upf3aQ3ULJ3 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Upf3aQ3ULJ3 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Upf3aQ3ULJ3 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Upf3aQ3ULJ3 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Gm9385-201ENSMUST00000117563 472 ntBASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Gm14722-201ENSMUST00000118943 689 ntBASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3aQ3ULJ3 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Gm16198-201ENSMUST00000118766 670 ntBASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms