Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Limch1Q3UH68 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Vti1a-206ENSMUST00000225529 1244 ntBASIC18.33■□□□□ 0.52
Limch1Q3UH68 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Limch1Q3UH68 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Gm1401-201ENSMUST00000122048 772 ntBASIC18.32■□□□□ 0.52
Limch1Q3UH68 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Mir5131-201ENSMUST00000175426 93 ntBASIC18.32■□□□□ 0.52
Limch1Q3UH68 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Limch1Q3UH68 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Gm37935-201ENSMUST00000192012 982 ntBASIC18.31■□□□□ 0.52
Limch1Q3UH68 AC132104.2-201ENSMUST00000215011 266 ntBASIC18.31■□□□□ 0.52
Limch1Q3UH68 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Limch1Q3UH68 Gm18856-201ENSMUST00000178096 1374 ntBASIC18.3■□□□□ 0.52
Limch1Q3UH68 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC18.3■□□□□ 0.52
Limch1Q3UH68 Gm25925-201ENSMUST00000158314 306 ntBASIC18.3■□□□□ 0.52
Limch1Q3UH68 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
Limch1Q3UH68 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Gm10060-201ENSMUST00000212002 111 ntBASIC18.29■□□□□ 0.52
Limch1Q3UH68 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms