Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC19.73■□□□□ 0.75
Ddb1Q3U1J4 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddb1Q3U1J4 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ddb1Q3U1J4 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Gm25144-201ENSMUST00000179561 110 ntBASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Gm25352-201ENSMUST00000179815 110 ntBASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Syt7-205ENSMUST00000224135 1557 ntBASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddb1Q3U1J4 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Gm16215-201ENSMUST00000161990 637 ntBASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.71■□□□□ 0.75
Ddb1Q3U1J4 Gm7901-201ENSMUST00000120430 1597 ntBASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Gm29541-201ENSMUST00000191351 678 ntBASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Gm44855-201ENSMUST00000205725 362 ntBASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddb1Q3U1J4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Gm14719-201ENSMUST00000121891 340 ntBASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Gm9794-201ENSMUST00000202370 423 ntBASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddb1Q3U1J4 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Rbfox2-206ENSMUST00000227314 1810 ntBASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Gm14722-201ENSMUST00000118943 689 ntBASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Gm16026-204ENSMUST00000162652 683 ntBASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms