Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Asic1-205ENSMUST00000228185 1818 ntBASIC15.24■□□□□ 0.03
Col9a1Q05722 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Alg13-207ENSMUST00000149330 479 ntTSL 2 BASIC15.24■□□□□ 0.03
Col9a1Q05722 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC15.24■□□□□ 0.03
Col9a1Q05722 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Col9a1Q05722 Gm29331-201ENSMUST00000187215 605 ntTSL 5 BASIC15.24■□□□□ 0.03
Col9a1Q05722 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC15.24■□□□□ 0.03
Col9a1Q05722 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col9a1Q05722 Trdn-202ENSMUST00000217779 1182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC15.24■□□□□ 0.03
Col9a1Q05722 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC15.24■□□□□ 0.03
Col9a1Q05722 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col9a1Q05722 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Gm20834-202ENSMUST00000185576 1220 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Gm45195-201ENSMUST00000205597 1008 ntBASIC15.23■□□□□ 0.03
Col9a1Q05722 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Gm40645-202ENSMUST00000219828 874 ntTSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col9a1Q05722 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Col9a1Q05722 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col9a1Q05722 AC119177.1-201ENSMUST00000227647 1332 ntBASIC15.22■□□□□ 0.03
Col9a1Q05722 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col9a1Q05722 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col9a1Q05722 Gm4204-201ENSMUST00000110798 1231 ntBASIC15.22■□□□□ 0.03
Col9a1Q05722 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col9a1Q05722 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col9a1Q05722 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col9a1Q05722 Gm8835-201ENSMUST00000173096 1169 ntBASIC15.22■□□□□ 0.03
Col9a1Q05722 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Col9a1Q05722 Gm28877-201ENSMUST00000191349 604 ntBASIC15.22■□□□□ 0.03
Col9a1Q05722 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC15.22■□□□□ 0.03
Col9a1Q05722 Gm42612-201ENSMUST00000197986 623 ntBASIC15.22■□□□□ 0.03
Col9a1Q05722 Gm43170-201ENSMUST00000199827 612 ntBASIC15.22■□□□□ 0.03
Col9a1Q05722 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC15.22■□□□□ 0.03
Col9a1Q05722 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col9a1Q05722 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col9a1Q05722 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC15.22■□□□□ 0.03
Col9a1Q05722 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC15.21■□□□□ 0.03
Col9a1Q05722 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Gm6263-201ENSMUST00000120029 1342 ntBASIC15.21■□□□□ 0.03
Col9a1Q05722 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col9a1Q05722 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC15.21■□□□□ 0.03
Col9a1Q05722 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC15.21■□□□□ 0.03
Col9a1Q05722 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.21■□□□□ 0.03
Col9a1Q05722 Gm16198-201ENSMUST00000118766 670 ntBASIC15.21■□□□□ 0.03
Col9a1Q05722 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Col9a1Q05722 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC15.21■□□□□ 0.03
Col9a1Q05722 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC15.21■□□□□ 0.03
Col9a1Q05722 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Col9a1Q05722 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col9a1Q05722 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Col9a1Q05722 Gm37424-201ENSMUST00000191727 561 ntBASIC15.21■□□□□ 0.03
Col9a1Q05722 Gm43830-201ENSMUST00000198760 1067 ntBASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms