Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.25□□□□□ -0.13
Cdh11P55288 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Cdh11P55288 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Cdh11P55288 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Cdh11P55288 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Cdh11P55288 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.24□□□□□ -0.13
Cdh11P55288 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.24□□□□□ -0.13
Cdh11P55288 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cdh11P55288 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.24□□□□□ -0.13
Cdh11P55288 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Slc35b2-202ENSMUST00000223987 1766 ntBASIC14.24□□□□□ -0.13
Cdh11P55288 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Cdh11P55288 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cdh11P55288 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdh11P55288 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC14.23□□□□□ -0.13
Cdh11P55288 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC14.23□□□□□ -0.13
Cdh11P55288 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC14.23□□□□□ -0.13
Cdh11P55288 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Cdh11P55288 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Cdh11P55288 Gm14026-201ENSMUST00000120625 1789 ntBASIC14.23□□□□□ -0.13
Cdh11P55288 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.23□□□□□ -0.13
Cdh11P55288 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC14.23□□□□□ -0.13
Cdh11P55288 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC14.23□□□□□ -0.13
Cdh11P55288 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdh11P55288 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC14.22□□□□□ -0.13
Cdh11P55288 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC14.22□□□□□ -0.13
Cdh11P55288 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Cdh11P55288 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Cdh11P55288 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC14.22□□□□□ -0.13
Cdh11P55288 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Cdh11P55288 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC14.22□□□□□ -0.13
Cdh11P55288 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Cdh11P55288 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cdh11P55288 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdh11P55288 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms