Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx3P48381 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx3P48381 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx3P48381 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx3P48381 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx3P48381 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx3P48381 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx3P48381 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Rfx3P48381 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx3P48381 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.12□□□□□ -0.15
Rfx3P48381 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Rfx3P48381 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Rfx3P48381 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Gm11950-201ENSMUST00000121615 838 ntBASIC14.11□□□□□ -0.15
Rfx3P48381 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Rfx3P48381 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
Rfx3P48381 AC125350.1-201ENSMUST00000225115 903 ntBASIC14.11□□□□□ -0.15
Rfx3P48381 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Rfx3P48381 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Rfx3P48381 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx3P48381 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.1□□□□□ -0.15
Rfx3P48381 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Rfx3P48381 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Rfx3P48381 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Rfx3P48381 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Rfx3P48381 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.1□□□□□ -0.15
Rfx3P48381 AA414768-201ENSMUST00000121924 1257 ntBASIC14.1□□□□□ -0.15
Rfx3P48381 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Rfx3P48381 Gm6728-201ENSMUST00000178117 1065 ntBASIC14.1□□□□□ -0.15
Rfx3P48381 Gm6345-202ENSMUST00000180900 204 ntBASIC14.1□□□□□ -0.15
Rfx3P48381 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.1□□□□□ -0.15
Rfx3P48381 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Rfx3P48381 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.1□□□□□ -0.15
Rfx3P48381 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Rfx3P48381 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx3P48381 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
Rfx3P48381 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Rfx3P48381 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.09□□□□□ -0.15
Rfx3P48381 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.09□□□□□ -0.15
Rfx3P48381 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC14.09□□□□□ -0.15
Rfx3P48381 Gm17808-201ENSMUST00000200859 894 ntBASIC14.09□□□□□ -0.15
Rfx3P48381 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.09□□□□□ -0.15
Rfx3P48381 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx3P48381 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms