Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Gm18666-201ENSMUST00000190039 958 ntBASIC12.96□□□□□ -0.33
Hmgb3O54879 Gm37179-201ENSMUST00000194862 823 ntBASIC12.96□□□□□ -0.33
Hmgb3O54879 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Gm10584-201ENSMUST00000207036 2628 ntBASIC12.96□□□□□ -0.33
Hmgb3O54879 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Hmgb3O54879 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Gm27528-202ENSMUST00000222916 2012 ntBASIC12.96□□□□□ -0.34
Hmgb3O54879 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Hmgb3O54879 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.95□□□□□ -0.34
Hmgb3O54879 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC12.95□□□□□ -0.34
Hmgb3O54879 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC12.95□□□□□ -0.34
Hmgb3O54879 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC12.95□□□□□ -0.34
Hmgb3O54879 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC12.95□□□□□ -0.34
Hmgb3O54879 Il3ra-202ENSMUST00000223589 738 ntBASIC12.95□□□□□ -0.34
Hmgb3O54879 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Hmgb3O54879 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Hmgb3O54879 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Hmgb3O54879 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Hmgb3O54879 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Hmgb3O54879 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hmgb3O54879 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC12.94□□□□□ -0.34
Hmgb3O54879 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Gm10602-201ENSMUST00000098239 609 ntBASIC12.94□□□□□ -0.34
Hmgb3O54879 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC12.94□□□□□ -0.34
Hmgb3O54879 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Gm6190-201ENSMUST00000220683 1374 ntBASIC12.94□□□□□ -0.34
Hmgb3O54879 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms