Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clk3O35492 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clk3O35492 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Clk3O35492 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Clk3O35492 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clk3O35492 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Clk3O35492 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.88□□□□□ -0.03
Clk3O35492 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC14.88□□□□□ -0.03
Clk3O35492 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 AC125350.1-201ENSMUST00000225115 903 ntBASIC14.88□□□□□ -0.03
Clk3O35492 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC14.88□□□□□ -0.03
Clk3O35492 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC14.88□□□□□ -0.03
Clk3O35492 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Clk3O35492 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clk3O35492 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Clk3O35492 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
Clk3O35492 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Clk3O35492 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.87□□□□□ -0.03
Clk3O35492 AC130713.1-201ENSMUST00000228853 1096 ntBASIC14.87□□□□□ -0.03
Clk3O35492 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Clk3O35492 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Clk3O35492 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
Clk3O35492 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Clk3O35492 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Clk3O35492 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC14.87□□□□□ -0.03
Clk3O35492 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Clk3O35492 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.87□□□□□ -0.03
Clk3O35492 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Clk3O35492 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Clk3O35492 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Clk3O35492 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Clk3O35492 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC14.86□□□□□ -0.03
Clk3O35492 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Clk3O35492 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Clk3O35492 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC14.85□□□□□ -0.03
Clk3O35492 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Clk3O35492 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.85□□□□□ -0.03
Clk3O35492 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms