Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC13.72□□□□□ -0.21
Trav13d-3J3QMG8 Gm5837-201ENSMUST00000191844 1369 ntBASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Gm8097-201ENSMUST00000117903 829 ntBASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Gm19164-201ENSMUST00000210667 640 ntBASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Gm10819-201ENSMUST00000099988 561 ntBASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-3J3QMG8 Asic1-205ENSMUST00000228185 1818 ntBASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Gm13337-201ENSMUST00000119183 1594 ntBASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Trav13d-3J3QMG8 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trav13d-3J3QMG8 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Grk6-207ENSMUST00000225925 2769 ntBASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav13d-3J3QMG8 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms