Protein–RNA interactions for Protein: E9PXC0

Srp54b, Signal recognition particle 54 kDa protein, mousemouse

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Srp54bE9PXC0 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Best4-ps-201ENSMUST00000129783 1380 ntBASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Srp54bE9PXC0 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Srp54bE9PXC0 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Srp54bE9PXC0 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Srp54bE9PXC0 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Srp54bE9PXC0 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 AC158538.2-201ENSMUST00000225455 906 ntBASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Srp54bE9PXC0 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Gm5648-201ENSMUST00000122244 1587 ntBASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Srp54bE9PXC0 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Gm17271-201ENSMUST00000165535 355 ntBASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Srp54bE9PXC0 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms