Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC15.25■□□□□ 0.03
Chd3B1AR17 Ndufaf2-202ENSMUST00000223734 556 ntBASIC15.25■□□□□ 0.03
Chd3B1AR17 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC15.25■□□□□ 0.03
Chd3B1AR17 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Gm13294-201ENSMUST00000121757 1330 ntBASIC15.25■□□□□ 0.03
Chd3B1AR17 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC15.25■□□□□ 0.03
Chd3B1AR17 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC15.24■□□□□ 0.03
Chd3B1AR17 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC15.24■□□□□ 0.03
Chd3B1AR17 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Chd3B1AR17 Prkcz2-201ENSMUST00000206136 1756 ntBASIC15.24■□□□□ 0.03
Chd3B1AR17 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chd3B1AR17 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC15.23■□□□□ 0.03
Chd3B1AR17 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Gm12892-201ENSMUST00000117367 1146 ntBASIC15.23■□□□□ 0.03
Chd3B1AR17 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.23■□□□□ 0.03
Chd3B1AR17 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Chd3B1AR17 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Chd3B1AR17 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC15.23■□□□□ 0.03
Chd3B1AR17 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
Chd3B1AR17 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Chd3B1AR17 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Chd3B1AR17 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Gm8318-201ENSMUST00000182954 872 ntBASIC15.23■□□□□ 0.03
Chd3B1AR17 Gm43332-201ENSMUST00000202511 1044 ntBASIC15.23■□□□□ 0.03
Chd3B1AR17 Gm45747-201ENSMUST00000212203 999 ntBASIC15.23■□□□□ 0.03
Chd3B1AR17 AC122024.2-201ENSMUST00000220086 871 ntBASIC15.23■□□□□ 0.03
Chd3B1AR17 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chd3B1AR17 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Chd3B1AR17 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Gm12008-201ENSMUST00000117791 755 ntBASIC15.22■□□□□ 0.03
Chd3B1AR17 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC15.22■□□□□ 0.03
Chd3B1AR17 Gm27301-201ENSMUST00000184012 127 ntBASIC15.22■□□□□ 0.03
Chd3B1AR17 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 AC174742.1-201ENSMUST00000218272 304 ntBASIC15.22■□□□□ 0.03
Chd3B1AR17 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC15.22■□□□□ 0.03
Chd3B1AR17 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC15.22■□□□□ 0.03
Chd3B1AR17 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Chd3B1AR17 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Chd3B1AR17 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Chd3B1AR17 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chd3B1AR17 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms