Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim54Q9ERP3 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim54Q9ERP3 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
Trim54Q9ERP3 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Gm9682-201ENSMUST00000197505 556 ntBASIC16.88■□□□□ 0.29
Trim54Q9ERP3 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Gm20628-201ENSMUST00000177363 3215 ntBASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim54Q9ERP3 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 AC151286.1-201ENSMUST00000198489 145 ntBASIC16.87■□□□□ 0.29
Trim54Q9ERP3 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Gm7787-201ENSMUST00000216858 688 ntBASIC16.87■□□□□ 0.29
Trim54Q9ERP3 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim54Q9ERP3 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.87■□□□□ 0.29
Trim54Q9ERP3 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms