Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Gm33142-201ENSMUST00000193913 867 ntBASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim11Q99PQ2 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm7284-201ENSMUST00000131667 944 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm8825-201ENSMUST00000182565 998 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm4518-201ENSMUST00000182638 718 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.8■□□□□ 0.44
Trim11Q99PQ2 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim11Q99PQ2 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.79■□□□□ 0.44
Trim11Q99PQ2 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim11Q99PQ2 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim11Q99PQ2 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim11Q99PQ2 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim11Q99PQ2 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim11Q99PQ2 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim11Q99PQ2 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms