Protein–RNA interactions for Protein: Q8VC34

Rpap2, Putative RNA polymerase II subunit B1 CTD phosphatase Rpap2, mousemouse

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap2Q8VC34 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rpap2Q8VC34 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Rpap2Q8VC34 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.14■□□□□ 0.33
Rpap2Q8VC34 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 AC093926.2-201ENSMUST00000214468 1228 ntBASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Gm6296-201ENSMUST00000222599 943 ntBASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rpap2Q8VC34 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rpap2Q8VC34 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Gm13418-201ENSMUST00000119097 944 ntBASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.12■□□□□ 0.33
Rpap2Q8VC34 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Rps4l-201ENSMUST00000071745 943 ntBASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rpap2Q8VC34 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpap2Q8VC34 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms