Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc9Q8VC31 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc9Q8VC31 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Flg-201ENSMUST00000050758 1488 ntBASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Gm4968-201ENSMUST00000071458 858 ntBASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc9Q8VC31 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Gm38285-201ENSMUST00000192928 922 ntBASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc9Q8VC31 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC18.83■□□□□ 0.61
Ccdc9Q8VC31 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ccdc9Q8VC31 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
Ccdc9Q8VC31 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc9Q8VC31 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms