Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trub1Q8C0D0 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trub1Q8C0D0 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trub1Q8C0D0 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trub1Q8C0D0 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trub1Q8C0D0 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trub1Q8C0D0 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Gm28033-201ENSMUST00000184224 96 ntBASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trub1Q8C0D0 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Gm8655-201ENSMUST00000221159 852 ntBASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trub1Q8C0D0 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Gm19164-201ENSMUST00000210667 640 ntBASIC16.11■□□□□ 0.17
Trub1Q8C0D0 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trub1Q8C0D0 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trub1Q8C0D0 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms