Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC14.58□□□□□ -0.08
ShhQ62226 Gm6089-201ENSMUST00000197666 938 ntBASIC14.58□□□□□ -0.08
ShhQ62226 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Gm43935-201ENSMUST00000203569 1050 ntBASIC14.58□□□□□ -0.08
ShhQ62226 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
ShhQ62226 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
ShhQ62226 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC14.57□□□□□ -0.08
ShhQ62226 Gm15173-201ENSMUST00000122049 433 ntBASIC14.57□□□□□ -0.08
ShhQ62226 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC14.57□□□□□ -0.08
ShhQ62226 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.57□□□□□ -0.08
ShhQ62226 Gm7230-201ENSMUST00000173026 815 ntBASIC14.57□□□□□ -0.08
ShhQ62226 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.57□□□□□ -0.08
ShhQ62226 Gm45683-201ENSMUST00000210825 1247 ntBASIC14.57□□□□□ -0.08
ShhQ62226 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.57□□□□□ -0.08
ShhQ62226 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
ShhQ62226 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ShhQ62226 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
ShhQ62226 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
ShhQ62226 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC14.56□□□□□ -0.08
ShhQ62226 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Gm8097-201ENSMUST00000117903 829 ntBASIC14.56□□□□□ -0.08
ShhQ62226 Gm14140-201ENSMUST00000119999 995 ntBASIC14.56□□□□□ -0.08
ShhQ62226 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Gm9727-201ENSMUST00000161387 555 ntBASIC14.56□□□□□ -0.08
ShhQ62226 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.56□□□□□ -0.08
ShhQ62226 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC14.56□□□□□ -0.08
ShhQ62226 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
ShhQ62226 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
ShhQ62226 AC151286.1-201ENSMUST00000198489 145 ntBASIC14.56□□□□□ -0.08
ShhQ62226 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC14.56□□□□□ -0.08
ShhQ62226 Ndufaf2-202ENSMUST00000223734 556 ntBASIC14.56□□□□□ -0.08
ShhQ62226 AC090659.1-201ENSMUST00000224334 768 ntBASIC14.56□□□□□ -0.08
ShhQ62226 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
ShhQ62226 Dancr-204ENSMUST00000132389 2347 ntBASIC14.56□□□□□ -0.08
ShhQ62226 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC14.56□□□□□ -0.08
ShhQ62226 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
ShhQ62226 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ShhQ62226 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
ShhQ62226 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.55□□□□□ -0.08
ShhQ62226 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.55□□□□□ -0.08
ShhQ62226 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
ShhQ62226 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.55□□□□□ -0.08
ShhQ62226 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ShhQ62226 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms