Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
Trim27Q62158 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC19.2■□□□□ 0.66
Trim27Q62158 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC19.2■□□□□ 0.66
Trim27Q62158 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim27Q62158 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim27Q62158 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim27Q62158 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Gm17971-201ENSMUST00000190239 806 ntBASIC19.2■□□□□ 0.66
Trim27Q62158 AC093926.2-201ENSMUST00000214468 1228 ntBASIC19.2■□□□□ 0.66
Trim27Q62158 AC160980.1-201ENSMUST00000224136 970 ntBASIC19.2■□□□□ 0.66
Trim27Q62158 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Trim27Q62158 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Trim27Q62158 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim27Q62158 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim27Q62158 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim27Q62158 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Gm27646-201ENSMUST00000183989 110 ntBASIC19.19■□□□□ 0.66
Trim27Q62158 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim27Q62158 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC19.18■□□□□ 0.66
Trim27Q62158 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim27Q62158 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC19.18■□□□□ 0.66
Trim27Q62158 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim27Q62158 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Trim27Q62158 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Trim27Q62158 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim27Q62158 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Trim27Q62158 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim27Q62158 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim27Q62158 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim27Q62158 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim27Q62158 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Tfap2a-203ENSMUST00000223869 2037 ntBASIC19.17■□□□□ 0.66
Trim27Q62158 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Trim27Q62158 Gm24589-201ENSMUST00000116692 94 ntBASIC19.17■□□□□ 0.66
Trim27Q62158 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC19.17■□□□□ 0.66
Trim27Q62158 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim27Q62158 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Trim27Q62158 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trim27Q62158 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trim27Q62158 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Trim27Q62158 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim27Q62158 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim27Q62158 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trim27Q62158 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim27Q62158 Gm45212-201ENSMUST00000205831 3403 ntBASIC19.16■□□□□ 0.66
Trim27Q62158 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim27Q62158 Gm14722-201ENSMUST00000118943 689 ntBASIC19.16■□□□□ 0.66
Trim27Q62158 Gm13418-201ENSMUST00000119097 944 ntBASIC19.16■□□□□ 0.66
Trim27Q62158 Gm15358-201ENSMUST00000119249 520 ntBASIC19.16■□□□□ 0.66
Trim27Q62158 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC19.16■□□□□ 0.66
Trim27Q62158 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim27Q62158 Gm43347-201ENSMUST00000200226 580 ntBASIC19.16■□□□□ 0.66
Trim27Q62158 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.16■□□□□ 0.66
Trim27Q62158 AC159106.1-201ENSMUST00000224421 690 ntBASIC19.16■□□□□ 0.66
Trim27Q62158 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms