Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC15.01□□□□□ -0.01
ClpbQ60649 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
ClpbQ60649 AC127349.1-201ENSMUST00000224590 266 ntBASIC15.01□□□□□ -0.01
ClpbQ60649 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
ClpbQ60649 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ClpbQ60649 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC15□□□□□ -0.01
ClpbQ60649 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Gm42901-201ENSMUST00000197735 3171 ntBASIC15□□□□□ -0.01
ClpbQ60649 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
ClpbQ60649 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC15□□□□□ -0.01
ClpbQ60649 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC15□□□□□ -0.01
ClpbQ60649 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
ClpbQ60649 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
ClpbQ60649 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC15□□□□□ -0.01
ClpbQ60649 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15□□□□□ -0.01
ClpbQ60649 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ClpbQ60649 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 AC163637.1-201ENSMUST00000215491 1894 ntBASIC14.99□□□□□ -0.01
ClpbQ60649 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC14.99□□□□□ -0.01
ClpbQ60649 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.99□□□□□ -0.01
ClpbQ60649 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC14.99□□□□□ -0.01
ClpbQ60649 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.99□□□□□ -0.01
ClpbQ60649 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.99□□□□□ -0.01
ClpbQ60649 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
ClpbQ60649 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
ClpbQ60649 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
ClpbQ60649 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ClpbQ60649 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
ClpbQ60649 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.98□□□□□ -0.01
ClpbQ60649 Gm25745-201ENSMUST00000174945 133 ntBASIC14.98□□□□□ -0.01
ClpbQ60649 Gm5864-201ENSMUST00000202263 970 ntBASIC14.98□□□□□ -0.01
ClpbQ60649 AC164629.2-201ENSMUST00000217916 270 ntBASIC14.98□□□□□ -0.01
ClpbQ60649 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.98□□□□□ -0.01
ClpbQ60649 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
ClpbQ60649 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
ClpbQ60649 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
ClpbQ60649 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
ClpbQ60649 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ClpbQ60649 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.97□□□□□ -0.01
ClpbQ60649 Asic1-205ENSMUST00000228185 1818 ntBASIC14.97□□□□□ -0.01
ClpbQ60649 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC14.97□□□□□ -0.01
ClpbQ60649 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC14.97□□□□□ -0.01
ClpbQ60649 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.97□□□□□ -0.01
ClpbQ60649 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
ClpbQ60649 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms