Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Nr1h4Q60641 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nr1h4Q60641 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC14.9□□□□□ -0.02
Nr1h4Q60641 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Nr1h4Q60641 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC14.9□□□□□ -0.02
Nr1h4Q60641 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nr1h4Q60641 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nr1h4Q60641 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Gm6257-201ENSMUST00000163864 910 ntBASIC14.88□□□□□ -0.03
Nr1h4Q60641 Gm20472-201ENSMUST00000174403 1240 ntBASIC14.88□□□□□ -0.03
Nr1h4Q60641 Mir6404-201ENSMUST00000183699 94 ntBASIC14.88□□□□□ -0.03
Nr1h4Q60641 AC134329.2-201ENSMUST00000217897 428 ntBASIC14.88□□□□□ -0.03
Nr1h4Q60641 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Nr1h4Q60641 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nr1h4Q60641 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms