Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.37■□□□□ 0.53
Limch1Q3UH68 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Gm27528-202ENSMUST00000222916 2012 ntBASIC18.37■□□□□ 0.53
Limch1Q3UH68 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC18.36■□□□□ 0.53
Limch1Q3UH68 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.36■□□□□ 0.53
Limch1Q3UH68 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Limch1Q3UH68 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm8349-201ENSMUST00000182720 1003 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44357-201ENSMUST00000195897 142 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm19658-201ENSMUST00000196231 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44367-201ENSMUST00000196836 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44350-201ENSMUST00000197197 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44390-201ENSMUST00000197533 144 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44313-201ENSMUST00000198018 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44486-201ENSMUST00000198508 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44314-201ENSMUST00000199263 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44394-201ENSMUST00000199558 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44484-201ENSMUST00000199873 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44466-201ENSMUST00000200264 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44359-201ENSMUST00000200671 138 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Asic1-205ENSMUST00000228185 1818 ntBASIC18.35■□□□□ 0.53
Limch1Q3UH68 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Limch1Q3UH68 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.34■□□□□ 0.53
Limch1Q3UH68 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Gm25406-201ENSMUST00000157599 105 ntBASIC18.34■□□□□ 0.53
Limch1Q3UH68 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC18.34■□□□□ 0.53
Limch1Q3UH68 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Limch1Q3UH68 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Limch1Q3UH68 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Limch1Q3UH68 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Limch1Q3UH68 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms