Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col9a1Q05722 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Gm5953-201ENSMUST00000220644 2616 ntBASIC15.28■□□□□ 0.04
Col9a1Q05722 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col9a1Q05722 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col9a1Q05722 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col9a1Q05722 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col9a1Q05722 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Col9a1Q05722 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC15.27■□□□□ 0.04
Col9a1Q05722 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col9a1Q05722 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Col9a1Q05722 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC15.27■□□□□ 0.04
Col9a1Q05722 Gm18351-201ENSMUST00000188646 883 ntBASIC15.27■□□□□ 0.04
Col9a1Q05722 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC15.27■□□□□ 0.04
Col9a1Q05722 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col9a1Q05722 Gm43068-201ENSMUST00000201095 1273 ntBASIC15.27■□□□□ 0.04
Col9a1Q05722 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col9a1Q05722 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col9a1Q05722 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col9a1Q05722 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Col9a1Q05722 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col9a1Q05722 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC15.27■□□□□ 0.03
Col9a1Q05722 Gm13857-203ENSMUST00000150561 2337 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col9a1Q05722 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC15.27■□□□□ 0.03
Col9a1Q05722 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col9a1Q05722 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col9a1Q05722 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col9a1Q05722 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col9a1Q05722 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col9a1Q05722 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 9030204H09Rik-201ENSMUST00000139455 653 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Gm45784-201ENSMUST00000188360 142 ntBASIC15.26■□□□□ 0.03
Col9a1Q05722 Gm36967-201ENSMUST00000193814 266 ntBASIC15.26■□□□□ 0.03
Col9a1Q05722 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col9a1Q05722 AC166341.4-201ENSMUST00000220625 123 ntBASIC15.26■□□□□ 0.03
Col9a1Q05722 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col9a1Q05722 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC15.26■□□□□ 0.03
Col9a1Q05722 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col9a1Q05722 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Gm18222-201ENSMUST00000202416 1387 ntBASIC15.25■□□□□ 0.03
Col9a1Q05722 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Gm15358-201ENSMUST00000119249 520 ntBASIC15.25■□□□□ 0.03
Col9a1Q05722 Gm8344-201ENSMUST00000119813 856 ntBASIC15.25■□□□□ 0.03
Col9a1Q05722 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Gm28630-201ENSMUST00000187806 498 ntBASIC15.25■□□□□ 0.03
Col9a1Q05722 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC15.25■□□□□ 0.03
Col9a1Q05722 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.25■□□□□ 0.03
Col9a1Q05722 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.25■□□□□ 0.03
Col9a1Q05722 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Gm3695-201ENSMUST00000087222 1009 ntBASIC15.25■□□□□ 0.03
Col9a1Q05722 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.25■□□□□ 0.03
Col9a1Q05722 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col9a1Q05722 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col9a1Q05722 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col9a1Q05722 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms