Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm6316-201ENSMUST00000082064 1020 ntBASIC13.32□□□□□ -0.28
Col8a1Q00780 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col8a1Q00780 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col8a1Q00780 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col8a1Q00780 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col8a1Q00780 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col8a1Q00780 Nrn1-204ENSMUST00000224323 1779 ntBASIC13.32□□□□□ -0.28
Col8a1Q00780 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
Col8a1Q00780 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col8a1Q00780 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col8a1Q00780 Gm45412-201ENSMUST00000210217 2275 ntBASIC13.32□□□□□ -0.28
Col8a1Q00780 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC13.32□□□□□ -0.28
Col8a1Q00780 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col8a1Q00780 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.31□□□□□ -0.28
Col8a1Q00780 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Col8a1Q00780 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Col8a1Q00780 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col8a1Q00780 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC13.3□□□□□ -0.28
Col8a1Q00780 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC13.3□□□□□ -0.28
Col8a1Q00780 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
Col8a1Q00780 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC13.3□□□□□ -0.28
Col8a1Q00780 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC13.3□□□□□ -0.28
Col8a1Q00780 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Col8a1Q00780 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Col8a1Q00780 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col8a1Q00780 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Col8a1Q00780 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Col8a1Q00780 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC13.29□□□□□ -0.28
Col8a1Q00780 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC13.29□□□□□ -0.28
Col8a1Q00780 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Gm15427-201ENSMUST00000117288 531 ntBASIC13.29□□□□□ -0.28
Col8a1Q00780 Gm6226-201ENSMUST00000117765 1146 ntBASIC13.29□□□□□ -0.28
Col8a1Q00780 Gm14127-201ENSMUST00000117906 678 ntBASIC13.29□□□□□ -0.28
Col8a1Q00780 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC13.29□□□□□ -0.28
Col8a1Q00780 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.29□□□□□ -0.28
Col8a1Q00780 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Mir6990-201ENSMUST00000183724 91 ntBASIC13.29□□□□□ -0.28
Col8a1Q00780 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.29□□□□□ -0.28
Col8a1Q00780 AC140397.2-201ENSMUST00000224213 834 ntBASIC13.29□□□□□ -0.28
Col8a1Q00780 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.29□□□□□ -0.28
Col8a1Q00780 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Col8a1Q00780 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
Col8a1Q00780 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms