Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.28□□□□□ -0.12
Cdh11P55288 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC14.28□□□□□ -0.12
Cdh11P55288 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Cdh11P55288 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Gm17971-201ENSMUST00000190239 806 ntBASIC14.28□□□□□ -0.12
Cdh11P55288 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.28□□□□□ -0.12
Cdh11P55288 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC14.28□□□□□ -0.12
Cdh11P55288 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Cdh11P55288 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.28□□□□□ -0.12
Cdh11P55288 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Cdh11P55288 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdh11P55288 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Cdh11P55288 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Cdh11P55288 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Cdh11P55288 Phf7-203ENSMUST00000226565 1971 ntBASIC14.27□□□□□ -0.12
Cdh11P55288 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Cdh11P55288 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdh11P55288 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC14.27□□□□□ -0.12
Cdh11P55288 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdh11P55288 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdh11P55288 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdh11P55288 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cdh11P55288 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC14.27□□□□□ -0.13
Cdh11P55288 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Cdh11P55288 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.27□□□□□ -0.13
Cdh11P55288 Gm28033-201ENSMUST00000184224 96 ntBASIC14.27□□□□□ -0.13
Cdh11P55288 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Cdh11P55288 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC14.27□□□□□ -0.13
Cdh11P55288 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdh11P55288 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Cdh11P55288 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Cdh11P55288 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Cdh11P55288 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Gm27357-201ENSMUST00000183754 135 ntBASIC14.26□□□□□ -0.13
Cdh11P55288 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Gm18115-201ENSMUST00000221209 621 ntBASIC14.26□□□□□ -0.13
Cdh11P55288 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Cdh11P55288 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Cdh11P55288 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Cdh11P55288 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC14.26□□□□□ -0.13
Cdh11P55288 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC14.26□□□□□ -0.13
Cdh11P55288 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Cdh11P55288 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdh11P55288 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.25□□□□□ -0.13
Cdh11P55288 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Cdh11P55288 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Cdh11P55288 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Gm29340-201ENSMUST00000188763 3854 ntBASIC14.25□□□□□ -0.13
Cdh11P55288 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdh11P55288 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms