Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC18.71■□□□□ 0.59
Rfx1P48377 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Mir5130-201ENSMUST00000175160 84 ntBASIC18.71■□□□□ 0.59
Rfx1P48377 Gm37055-201ENSMUST00000191866 133 ntBASIC18.71■□□□□ 0.59
Rfx1P48377 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.71■□□□□ 0.59
Rfx1P48377 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.71■□□□□ 0.59
Rfx1P48377 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Rfx1P48377 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC18.71■□□□□ 0.59
Rfx1P48377 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC18.71■□□□□ 0.59
Rfx1P48377 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Rfx1P48377 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx1P48377 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Rfx1P48377 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC18.7■□□□□ 0.58
Rfx1P48377 Spcs1-207ENSMUST00000228767 1008 ntBASIC18.7■□□□□ 0.58
Rfx1P48377 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Rfx1P48377 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Rfx1P48377 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx1P48377 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Rfx1P48377 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Rfx1P48377 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC18.69■□□□□ 0.58
Rfx1P48377 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.69■□□□□ 0.58
Rfx1P48377 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.69■□□□□ 0.58
Rfx1P48377 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Rfx1P48377 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx1P48377 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.69■□□□□ 0.58
Rfx1P48377 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Rfx1P48377 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.68■□□□□ 0.58
Rfx1P48377 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.68■□□□□ 0.58
Rfx1P48377 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Gm27011-201ENSMUST00000182352 972 ntBASIC18.68■□□□□ 0.58
Rfx1P48377 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Gm37728-201ENSMUST00000195025 2292 ntBASIC18.68■□□□□ 0.58
Rfx1P48377 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Rfx1P48377 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx1P48377 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC18.67■□□□□ 0.58
Rfx1P48377 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Rfx1P48377 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.67■□□□□ 0.58
Rfx1P48377 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.67■□□□□ 0.58
Rfx1P48377 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC18.67■□□□□ 0.58
Rfx1P48377 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.67■□□□□ 0.58
Rfx1P48377 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms