Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.83□□□□□ -0.04
Msx1P13297 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Msx1P13297 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Msx1P13297 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.82□□□□□ -0.04
Msx1P13297 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Msx1P13297 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Msx1P13297 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
Msx1P13297 Gm20865-201ENSMUST00000179095 856 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Msx1P13297 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.82□□□□□ -0.04
Msx1P13297 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Clec4d-201ENSMUST00000032240 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Zkscan3-208ENSMUST00000224820 5398 ntBASIC14.82□□□□□ -0.04
Msx1P13297 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Msx1P13297 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msx1P13297 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Msx1P13297 Gm19430-201ENSMUST00000193847 2137 ntBASIC14.81□□□□□ -0.04
Msx1P13297 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Msx1P13297 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Gm12106-201ENSMUST00000116006 1200 ntBASIC14.81□□□□□ -0.04
Msx1P13297 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.81□□□□□ -0.04
Msx1P13297 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.81□□□□□ -0.04
Msx1P13297 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC14.81□□□□□ -0.04
Msx1P13297 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.81□□□□□ -0.04
Msx1P13297 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Msx1P13297 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC14.81□□□□□ -0.04
Msx1P13297 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msx1P13297 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.8□□□□□ -0.04
Msx1P13297 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Msx1P13297 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.8□□□□□ -0.04
Msx1P13297 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC14.8□□□□□ -0.04
Msx1P13297 AC090659.1-201ENSMUST00000224334 768 ntBASIC14.8□□□□□ -0.04
Msx1P13297 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Msx1P13297 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.8□□□□□ -0.04
Msx1P13297 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Msx1P13297 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Msx1P13297 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msx1P13297 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msx1P13297 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msx1P13297 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msx1P13297 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC14.79□□□□□ -0.04
Msx1P13297 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Msx1P13297 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msx1P13297 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms