Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC12.16□□□□□ -0.46
Hoxd3P09027 AV026068-213ENSMUST00000223675 1171 ntBASIC12.16□□□□□ -0.46
Hoxd3P09027 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC12.16□□□□□ -0.46
Hoxd3P09027 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxd3P09027 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Gm8344-201ENSMUST00000119813 856 ntBASIC12.15□□□□□ -0.46
Hoxd3P09027 Gm1401-201ENSMUST00000122048 772 ntBASIC12.15□□□□□ -0.46
Hoxd3P09027 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC12.15□□□□□ -0.46
Hoxd3P09027 G530012D18Rik-201ENSMUST00000178024 420 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Gm37592-201ENSMUST00000192741 373 ntTSL 5 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC12.15□□□□□ -0.46
Hoxd3P09027 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxd3P09027 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Hoxd3P09027 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Hoxd3P09027 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Hoxd3P09027 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Hoxd3P09027 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 AC154527.4-201ENSMUST00000224364 1667 ntBASIC12.14□□□□□ -0.47
Hoxd3P09027 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC12.14□□□□□ -0.47
Hoxd3P09027 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC12.14□□□□□ -0.47
Hoxd3P09027 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxd3P09027 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms