Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Col3a1P08121 Gm13410-201ENSMUST00000117058 1415 ntBASIC18.51■□□□□ 0.55
Col3a1P08121 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC18.51■□□□□ 0.55
Col3a1P08121 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC18.51■□□□□ 0.55
Col3a1P08121 Gm18889-201ENSMUST00000174284 929 ntBASIC18.51■□□□□ 0.55
Col3a1P08121 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col3a1P08121 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC18.5■□□□□ 0.55
Col3a1P08121 Rprl2-201ENSMUST00000157150 290 ntBASIC18.5■□□□□ 0.55
Col3a1P08121 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Gm37171-201ENSMUST00000192636 1185 ntBASIC18.5■□□□□ 0.55
Col3a1P08121 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC18.5■□□□□ 0.55
Col3a1P08121 Gm44872-201ENSMUST00000207864 420 ntBASIC18.5■□□□□ 0.55
Col3a1P08121 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Col3a1P08121 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col3a1P08121 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Col3a1P08121 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Col3a1P08121 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC18.49■□□□□ 0.55
Col3a1P08121 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC18.49■□□□□ 0.55
Col3a1P08121 Gm43125-201ENSMUST00000201724 730 ntBASIC18.49■□□□□ 0.55
Col3a1P08121 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC18.49■□□□□ 0.55
Col3a1P08121 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Col3a1P08121 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
Col3a1P08121 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col3a1P08121 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Col3a1P08121 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Col3a1P08121 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Col3a1P08121 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Col3a1P08121 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Gm43474-201ENSMUST00000196415 774 ntBASIC18.48■□□□□ 0.55
Col3a1P08121 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC18.48■□□□□ 0.55
Col3a1P08121 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC18.48■□□□□ 0.55
Col3a1P08121 Nudt18-203ENSMUST00000228768 1578 ntBASIC18.48■□□□□ 0.55
Col3a1P08121 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
Col3a1P08121 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Col3a1P08121 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC18.48■□□□□ 0.55
Col3a1P08121 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Col3a1P08121 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Col3a1P08121 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col3a1P08121 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC18.47■□□□□ 0.55
Col3a1P08121 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC18.47■□□□□ 0.55
Col3a1P08121 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC18.47■□□□□ 0.55
Col3a1P08121 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col3a1P08121 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC18.47■□□□□ 0.55
Col3a1P08121 CT030684.1-201ENSMUST00000227292 914 ntBASIC18.47■□□□□ 0.55
Col3a1P08121 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms