Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC18.41■□□□□ 0.54
Scn11aQ9R053 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn11aQ9R053 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Scn11aQ9R053 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 CT025555.1-201ENSMUST00000225901 1217 ntBASIC18.4■□□□□ 0.54
Scn11aQ9R053 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Gpr146-202ENSMUST00000053120 1040 ntBASIC18.4■□□□□ 0.54
Scn11aQ9R053 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn11aQ9R053 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
Scn11aQ9R053 AC126250.1-201ENSMUST00000228343 1768 ntBASIC18.39■□□□□ 0.54
Scn11aQ9R053 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Scn11aQ9R053 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Gm14127-201ENSMUST00000117906 678 ntBASIC18.39■□□□□ 0.53
Scn11aQ9R053 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Scn11aQ9R053 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Gm5866-201ENSMUST00000177881 973 ntBASIC18.38■□□□□ 0.53
Scn11aQ9R053 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.38■□□□□ 0.53
Scn11aQ9R053 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn11aQ9R053 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Gm13365-201ENSMUST00000121188 973 ntBASIC18.37■□□□□ 0.53
Scn11aQ9R053 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC18.37■□□□□ 0.53
Scn11aQ9R053 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC18.37■□□□□ 0.53
Scn11aQ9R053 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC18.37■□□□□ 0.53
Scn11aQ9R053 Gm7556-201ENSMUST00000201178 1084 ntBASIC18.37■□□□□ 0.53
Scn11aQ9R053 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Nudt18-203ENSMUST00000228768 1578 ntBASIC18.36■□□□□ 0.53
Scn11aQ9R053 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms