Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm9797-201ENSMUST00000052902 613 ntBASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Scn4aQ9ER60 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Gm27839-201ENSMUST00000184242 106 ntBASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Gm3786-201ENSMUST00000202659 378 ntBASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Gm45841-201ENSMUST00000207700 164 ntBASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn4aQ9ER60 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Gm42853-201ENSMUST00000201273 1387 ntBASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Mir6392-201ENSMUST00000184924 108 ntBASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Gm7390-201ENSMUST00000212452 1216 ntBASIC21.2■□□□□ 0.98
Scn4aQ9ER60 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC21.2■□□□□ 0.98
Scn4aQ9ER60 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn4aQ9ER60 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn4aQ9ER60 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Scn4aQ9ER60 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn4aQ9ER60 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC21.19■□□□□ 0.98
Scn4aQ9ER60 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC21.19■□□□□ 0.98
Scn4aQ9ER60 AC160980.1-201ENSMUST00000224136 970 ntBASIC21.19■□□□□ 0.98
Scn4aQ9ER60 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn4aQ9ER60 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn4aQ9ER60 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Gm37424-201ENSMUST00000191727 561 ntBASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Gm8969-201ENSMUST00000199694 526 ntBASIC21.18■□□□□ 0.98
Scn4aQ9ER60 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn4aQ9ER60 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn4aQ9ER60 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Scn4aQ9ER60 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn4aQ9ER60 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn4aQ9ER60 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC21.17■□□□□ 0.98
Scn4aQ9ER60 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC21.17■□□□□ 0.98
Scn4aQ9ER60 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn4aQ9ER60 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Scn4aQ9ER60 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Gm7172-201ENSMUST00000218047 1152 ntBASIC21.16■□□□□ 0.98
Scn4aQ9ER60 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn4aQ9ER60 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Ldha-ps-201ENSMUST00000119390 995 ntBASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC21.15■□□□□ 0.98
Scn4aQ9ER60 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC21.14■□□□□ 0.98
Scn4aQ9ER60 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn4aQ9ER60 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn4aQ9ER60 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn4aQ9ER60 Prkcz2-201ENSMUST00000206136 1756 ntBASIC21.14■□□□□ 0.98
Scn4aQ9ER60 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn4aQ9ER60 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms