Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Ccdc28aQ8CEI3 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Gm7889-201ENSMUST00000185591 958 ntBASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 AC134329.2-201ENSMUST00000217897 428 ntBASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Gm21559-201ENSMUST00000220638 855 ntBASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Gm8587-201ENSMUST00000076538 843 ntBASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28aQ8CEI3 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28aQ8CEI3 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Gm11355-201ENSMUST00000121120 306 ntBASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 AC114585.2-202ENSMUST00000228094 426 ntBASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28aQ8CEI3 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Ccdc28aQ8CEI3 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28aQ8CEI3 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28aQ8CEI3 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28aQ8CEI3 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28aQ8CEI3 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms