Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Gm32996-201ENSMUST00000199828 1447 ntBASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Nup88Q8CEC0 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Gm44430-201ENSMUST00000203376 995 ntBASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Gm18195-201ENSMUST00000207604 706 ntBASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nup88Q8CEC0 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.48■□□□□ 0.55
Nup88Q8CEC0 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Gm11452-201ENSMUST00000122376 690 ntBASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 AW822252-206ENSMUST00000208904 237 ntBASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Rps4l-201ENSMUST00000071745 943 ntBASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nup88Q8CEC0 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.46■□□□□ 0.55
Nup88Q8CEC0 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Gm18733-201ENSMUST00000173950 856 ntBASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nup88Q8CEC0 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nup88Q8CEC0 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 71.8 ms