Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 AC090659.1-201ENSMUST00000224334 768 ntBASIC22.04■■□□□ 1.12
Usp47Q8BY87 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp47Q8BY87 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC22.03■■□□□ 1.12
Usp47Q8BY87 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Dancr-204ENSMUST00000132389 2347 ntBASIC22.03■■□□□ 1.12
Usp47Q8BY87 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp47Q8BY87 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Gm11453-201ENSMUST00000117318 1007 ntBASIC22.02■■□□□ 1.12
Usp47Q8BY87 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Gm25911-201ENSMUST00000157621 56 ntBASIC22.02■■□□□ 1.12
Usp47Q8BY87 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp47Q8BY87 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Usp47Q8BY87 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp47Q8BY87 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Usp47Q8BY87 AC157650.3-201ENSMUST00000225058 1476 ntBASIC22.01■■□□□ 1.11
Usp47Q8BY87 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp47Q8BY87 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Gm10499-201ENSMUST00000174094 934 ntBASIC22■■□□□ 1.11
Usp47Q8BY87 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC22■■□□□ 1.11
Usp47Q8BY87 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC22■■□□□ 1.11
Usp47Q8BY87 Ccdc166-201ENSMUST00000182172 2584 ntBASIC22■■□□□ 1.11
Usp47Q8BY87 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp47Q8BY87 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Gm17968-201ENSMUST00000194902 784 ntBASIC21.99■■□□□ 1.11
Usp47Q8BY87 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Gm18246-201ENSMUST00000221023 728 ntBASIC21.99■■□□□ 1.11
Usp47Q8BY87 AC159295.1-201ENSMUST00000225326 940 ntBASIC21.99■■□□□ 1.11
Usp47Q8BY87 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Usp47Q8BY87 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms