Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Usp40Q8BWR4 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 AC155252.2-201ENSMUST00000226946 680 ntBASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Usp40Q8BWR4 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Gm27301-201ENSMUST00000184012 127 ntBASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Gm45244-201ENSMUST00000211328 2200 ntBASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Usp40Q8BWR4 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Usp40Q8BWR4 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Usp40Q8BWR4 AC157650.3-201ENSMUST00000225058 1476 ntBASIC21.39■■□□□ 1.02
Usp40Q8BWR4 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Usp40Q8BWR4 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Thap2-203ENSMUST00000218989 527 ntBASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Usp40Q8BWR4 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Gm6226-201ENSMUST00000117765 1146 ntBASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Gm20553-201ENSMUST00000204205 844 ntBASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Usp40Q8BWR4 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Gm27494-201ENSMUST00000184735 189 ntBASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Gm45612-201ENSMUST00000211320 160 ntBASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms