Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm27628-201ENSMUST00000184911 107 ntBASIC18.46■□□□□ 0.55
Trim56Q80VI1 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 AW822252-206ENSMUST00000208904 237 ntBASIC18.46■□□□□ 0.55
Trim56Q80VI1 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 AC147366.1-201ENSMUST00000227671 852 ntBASIC18.46■□□□□ 0.55
Trim56Q80VI1 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.46■□□□□ 0.55
Trim56Q80VI1 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim56Q80VI1 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Trim56Q80VI1 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Trim56Q80VI1 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC18.46■□□□□ 0.54
Trim56Q80VI1 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Trim56Q80VI1 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim56Q80VI1 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Gm11185-201ENSMUST00000117732 1007 ntBASIC18.44■□□□□ 0.54
Trim56Q80VI1 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim56Q80VI1 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Gm6184-201ENSMUST00000120403 1261 ntBASIC18.43■□□□□ 0.54
Trim56Q80VI1 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
Trim56Q80VI1 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC18.43■□□□□ 0.54
Trim56Q80VI1 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trim56Q80VI1 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim56Q80VI1 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim56Q80VI1 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms