Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Gm10052-201ENSMUST00000168019 960 ntBASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Gm21559-201ENSMUST00000220638 855 ntBASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Gm7729-201ENSMUST00000050143 801 ntBASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Gm8587-201ENSMUST00000076538 843 ntBASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.56■□□□□ 0.4
Tpm4Q6IRU2 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Gm11355-201ENSMUST00000121120 306 ntBASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Gm22697-201ENSMUST00000175194 63 ntBASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Gm37722-201ENSMUST00000193757 208 ntBASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Tpm4Q6IRU2 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Tpm4Q6IRU2 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
Tpm4Q6IRU2 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Tpm4Q6IRU2 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Tpm4Q6IRU2 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms