Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Haglr-201ENSMUST00000100000 2085 ntBASIC12.82□□□□□ -0.36
Col7a1Q63870 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Col7a1Q63870 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.82□□□□□ -0.36
Col7a1Q63870 Ighv8-7-201ENSMUST00000194349 297 ntBASIC12.82□□□□□ -0.36
Col7a1Q63870 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC12.82□□□□□ -0.36
Col7a1Q63870 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC12.82□□□□□ -0.36
Col7a1Q63870 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
Col7a1Q63870 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col7a1Q63870 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC12.81□□□□□ -0.36
Col7a1Q63870 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Col7a1Q63870 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Dmtn-207ENSMUST00000228001 2437 ntBASIC12.81□□□□□ -0.36
Col7a1Q63870 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.81□□□□□ -0.36
Col7a1Q63870 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.81□□□□□ -0.36
Col7a1Q63870 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC12.81□□□□□ -0.36
Col7a1Q63870 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Col7a1Q63870 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Gm14660-201ENSMUST00000119809 575 ntBASIC12.81□□□□□ -0.36
Col7a1Q63870 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC12.81□□□□□ -0.36
Col7a1Q63870 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 AC155252.1-201ENSMUST00000226462 1208 ntBASIC12.81□□□□□ -0.36
Col7a1Q63870 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col7a1Q63870 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC12.8□□□□□ -0.36
Col7a1Q63870 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Gm4984-201ENSMUST00000115987 360 ntBASIC12.8□□□□□ -0.36
Col7a1Q63870 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Col7a1Q63870 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Col7a1Q63870 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col7a1Q63870 Gm23931-201ENSMUST00000103842 109 ntBASIC12.79□□□□□ -0.36
Col7a1Q63870 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col7a1Q63870 Gm6244-201ENSMUST00000178732 841 ntBASIC12.79□□□□□ -0.36
Col7a1Q63870 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.79□□□□□ -0.36
Col7a1Q63870 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Col7a1Q63870 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col7a1Q63870 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col7a1Q63870 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col7a1Q63870 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col7a1Q63870 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC12.78□□□□□ -0.36
Col7a1Q63870 Gm37714-201ENSMUST00000194742 342 ntBASIC12.78□□□□□ -0.36
Col7a1Q63870 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC12.78□□□□□ -0.36
Col7a1Q63870 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC12.78□□□□□ -0.36
Col7a1Q63870 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Col7a1Q63870 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col7a1Q63870 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms