Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Usp28Q5I043 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp28Q5I043 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.79■□□□□ 0.44
Usp28Q5I043 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Gm25016-201ENSMUST00000158399 131 ntBASIC17.79■□□□□ 0.44
Usp28Q5I043 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.79■□□□□ 0.44
Usp28Q5I043 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp28Q5I043 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Usp28Q5I043 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Usp28Q5I043 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 AA414768-201ENSMUST00000121924 1257 ntBASIC17.78■□□□□ 0.44
Usp28Q5I043 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.78■□□□□ 0.44
Usp28Q5I043 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Usp28Q5I043 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.78■□□□□ 0.44
Usp28Q5I043 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp28Q5I043 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.77■□□□□ 0.44
Usp28Q5I043 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Usp28Q5I043 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Usp28Q5I043 Gm29340-201ENSMUST00000188763 3854 ntBASIC17.77■□□□□ 0.44
Usp28Q5I043 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.77■□□□□ 0.44
Usp28Q5I043 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.77■□□□□ 0.44
Usp28Q5I043 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.77■□□□□ 0.44
Usp28Q5I043 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Usp28Q5I043 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp28Q5I043 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp28Q5I043 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp28Q5I043 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp28Q5I043 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC17.77■□□□□ 0.43
Usp28Q5I043 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp28Q5I043 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.76■□□□□ 0.43
Usp28Q5I043 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms