Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim40Q3UWA4 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Gm27463-201ENSMUST00000183569 57 ntBASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim40Q3UWA4 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Gm715-201ENSMUST00000117865 831 ntBASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim40Q3UWA4 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Gm3375-201ENSMUST00000203929 796 ntBASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Arhgef4-208ENSMUST00000211073 171 ntBASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim40Q3UWA4 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms