Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Grk6-207ENSMUST00000225925 2769 ntBASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Mir6956-201ENSMUST00000183598 62 ntBASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 AC159114.1-201ENSMUST00000220349 266 ntBASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 AC139382.1-201ENSMUST00000221402 498 ntBASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Upf3aQ3ULJ3 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3aQ3ULJ3 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Gm13616-201ENSMUST00000120600 222 ntBASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Gm44335-201ENSMUST00000196879 141 ntBASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Gm44297-201ENSMUST00000198304 141 ntBASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Gm44346-201ENSMUST00000198851 141 ntBASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Gm5312-201ENSMUST00000203728 547 ntBASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3aQ3ULJ3 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3aQ3ULJ3 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms